D3Oncoprint
Overview: A Standalone Software to Visualize and Dynamically Explore Annotated Genomic Mutation Files
D3Oncoprint supports interactive exploration of genomic datasets. This standalone software works on local machines -- no programming skills are required. Researchers can use it to analyze annotated genomic mutation files.
D3Oncoprint includes curated lists of variants lists from CIViC, My Cancer Genome, and FDA-approved drug indication listings. These genomic datasets facilitate biomedical discovery and application. D3Oncoprint also includes curated gene lists that can be used to explore commonly investigated biological processes (i.e., BioCarta pathways, FoundationOne cancer panels).
Our software provides a flexible way to explore variant mutation profile inputs. Interactive visualization with biological and medical annotation is central to its processes. This allows biomedical investigators to easily access complex genomic data. We hope that this will empower researchers to translate information from the collected data sets and apply it to new biological insights and clinical applications.
IMPORTANT NOTE: Some operating systems (OS) may not allow default installation of "unofficial apps" downloaded from the internet. This issue is not specific to the D3Oncoprint executable file; it depends on your OS’s security requirements. If the D3Oncoprint executable file doesn't seem to run, please inspect your OS’s security warnings. You may need to change the system settings to allow the D3Oncoprint application to be downloaded and executed. This issue should only occur once; OS security settings will then be saved on your machine.
Disclaimer: This resource is intended for purely research purposes. It should not be used for emergencies or medical or professional advice.
Download
Read more about the application
D3Oncoprint: Stand-Alone Software to Visualize and Dynamically Explore Annotated Genomic Mutation Files
Alida Palmisano, Yingdong Zhao and Richard Simon, JCO Clinical Cancer Informatics, 2018. nr. 2, p. 1-9
Software Screenshots