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Proteomics Computational Tools

Clinical Proteomic Tumor Analysis Consortium (CPTAC)

To advance precision medicine by understanding aspects of the molecular complexity of cancer, the Clinical Proteomic Tumor Analysis Consortium (CPTAC) program develops novel approaches to process large-scale proteogenomic data sets.

An important part of the CPTAC mission is to make data and tools available and accessible to the greater research community. Here, OCCPR has curated a collection of computational tools developed and/or utilized by CPTAC for processing and analysis of proteogenomic data. Although NCI does not endorse any specific tool, this list serves as a gateway for researchers for accessing bioinformatic tools that are useful for analyzing and/or visualizing large-scale proteomic and proteogenomic datasets generated through high-throughput screens and other approaches.

Data Access

Data Processing and QC

Data Analysis

Databases and Web Portals

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